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1

Analysis of [FeFe]-hydrogenase genes for the elucidation of a hydrogen-producing bacterial community in paddy field soil

Baba, Ryuko, Kimura, Makoto, Asakawa, Susumu, Watanabe, Takeshi

Journal:

FEMS Microbiology Letters

Year:

2014

Language:

english

File:

PDF, 1.43 MB

english, 2014

2

Effect of fertilizer and manure application on microbial numbers, biomass, and enzyme activities in volcanic ash soils

Kanazawa, Shinjiro, Asakawa, Susumu, Takai, Yasuo

Journal:

Soil Science & Plant Nutrition

Year:

1988

Language:

english

File:

PDF, 723 KB

english, 1988

3

Evaluation of Suppressiveness of Soils Exhibiting Soil-Borne Disease Suppression after Long-Term Application of Organic Amendments by the Co-cultivation Method of Pathogenic Fusarium oxysporum and Indigenous Soil Microorganisms

Mitsuboshi, Masahiro, Kioka, Yuuzou, Noguchi, Katsunori, Asakawa, Susumu

Journal:

Microbes and Environments

Year:

2018

Language:

english

File:

PDF, 494 KB

english, 2018

4

Microbial community responsible for the decomposition of rice straw in a paddy field: estimation by phospholipid fatty acid analysis

Asumi Nakamura, ChoCho Tun, Susumu Asakawa, Makoto Kimura

Journal:

Biology and Fertility of Soils

Year:

2003

Language:

english

File:

PDF, 225 KB

english, 2003

5

Phylogenetic positions of Mn2+-oxidizing bacteria and fungi isolated from Mn nodules in rice field subsoils

Vita Ratri Cahyani, Jun Murase, Eiji Ishibashi, Susumu Asakawa, Makoto Kimura

Journal:

Biology and Fertility of Soils

Year:

2009

Language:

english

File:

PDF, 322 KB

english, 2009

6

Seasonal variations in the abundance of virus-like particles and bacteria in the floodwater of a Japanese paddy field

Natsuko NAKAYAMA, Mami OKUMURA, Katsuhiro INOUE, Susumu ASAKAWA, Makoto KIMURA

Journal:

Soil Science & Plant Nutrition

Year:

2007

Language:

english

File:

PDF, 530 KB

english, 2007

7

Bacterial populations assimilating carbon from 13C-labeled plant residue in soil: Analysis by a DNA-SIP approach

Chol Gyu Lee, Takeshi Watanabe, Yutaka Sato, Jun Murase, Susumu Asakawa, Makoto Kimura

Journal:

Soil Biology and Biochemistry

Year:

2011

Language:

english

File:

PDF, 843 KB

english, 2011

8

Community structure of bacteria and fungi responsible for rice straw decomposition in a paddy field estimated by PCR-RFLP analysis

Tun, Cho Cho, Ikenaga, Makoto, Asakawa, Susumu, Kimura, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2002

Language:

english

File:

PDF, 946 KB

english, 2002

9

Microbial communities responsible for the decomposition of rice straw compost in a Japanese rice paddy field determined by phospholipid fatty acid (PLFA) analysis

Tanahashi, Takanori, Murase, Jun, Matsuya, Kazuo, Asakawa, Susumu, Kimura, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2004

Language:

english

File:

PDF, 793 KB

english, 2004

10

Influence of alternate wetting and drying water-saving irrigation practice on the dynamics of Gallionella-related iron-oxidizing bacterial community in paddy field soil

Watanabe, Takeshi, Katayanagi, Nobuko, Agbisit, Ruth, Llorca, Lizzida, Hosen, Yasukazu, Asakawa, Susumu

Journal:

Soil Biology and Biochemistry

Year:

2020

File:

PDF, 1.65 MB

2020

11

DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil

Takeshi Watanabe, Susumu Asakawa, Asumi Nakamura, Kazunari Nagaoka, Makoto Kimura

Journal:

FEMS Microbiology Letters

Year:

2004

Language:

english

File:

PDF, 871 KB

english, 2004

12

Characterization ofMethanosarcina mazeiiTMA isolated from a paddy field soil

Susumu Asakawa, Masayo Akagawa-Matsushita, Hiroyuki Morii, Yosuke Koga, Koichi Hayano

Journal:

Current Microbiology

Year:

1995

Language:

english

File:

PDF, 575 KB

english, 1995

13

Phylogenetic study on a bacterial community in the floodwater of a Japanese paddy field estimated by sequencing 16S rDNA fragments after denaturing gradient gel electrophoresis

Taketoshi Shibagaki-Shimizu, Natsuko Nakayama, Yasunori Nakajima, Kazuo Matsuya, Makoto Kimura, Susumu Asakawa

Journal:

Biology and Fertility of Soils

Year:

2006

Language:

english

File:

PDF, 265 KB

english, 2006

14

Molecular identification of methane oxidizing bacteria in a Japanese rice field soil

Zhongjun Jia, Hiroyasu Kikuchi, Takeshi Watanabe, Susumu Asakawa, Makoto Kimura

Journal:

Biology and Fertility of Soils

Year:

2007

Language:

english

File:

PDF, 326 KB

english, 2007

15

Unique viral capsid assembly protein gene (g20) of cyanophages in the floodwater of a Japanese paddy field

Guanghua Wang, Jun Murase, Susumu Asakawa, Makoto Kimura

Journal:

Biology and Fertility of Soils

Year:

2010

Language:

english

File:

PDF, 346 KB

english, 2010

16

Spatial and temporal changes of cyanophage communities in paddy field soils as revealed by the capsid assembly protein gene g20

Guanghua Wang, Susumu Asakawa, Makoto Kimura

Journal:

FEMS Microbiology Ecology

Year:

2011

Language:

english

File:

PDF, 251 KB

english, 2011

17

Incorporation of plant residue–derived carbon into the microeukaryotic community in a rice field soil revealed by DNA stable-isotope probing

Jun Murase, Manami Shibata, Chol Gyu Lee, Takeshi Watanabe, Susumu Asakawa, Makoto Kimura

Journal:

FEMS Microbiology Ecology

Year:

2012

Language:

english

File:

PDF, 474 KB

english, 2012

18

Bacterial Communities Responsible for the Decomposition of Rice Straw Compost in a Japanese Rice Paddy Field Estimated by DGGE Analysis of Amplified 16S rDNA and 16S rRNA Fragments

Takanori Tanahashi, Jun Murase, Kazuo Matsuya, Motoki Hayashi, Makoto Kimura, Susumu Asakawa

Journal:

Soil Science & Plant Nutrition

Year:

2005

Language:

english

File:

PDF, 1.17 MB

english, 2005

19

Molecular analysis of the ammonia oxidizing bacterial community in the surface soil layer of a Japanese paddy field

Saman BOWATTE, Zhongjun JIA, Rie ISHIHARA, Yasunori NAKAJIMA, Susumu ASAKAWA, Makoto KIMURA

Journal:

Soil Science & Plant Nutrition

Year:

2006

Language:

english

File:

PDF, 236 KB

english, 2006

20

Phylogenetic distribution of bacteria isolated from the floodwater of a Japanese paddy field

Natsuko NAKAYAMA, Akiko OKABE, Koki TOYOTA, Makoto KIMURA, Susumu ASAKAWA

Journal:

Soil Science & Plant Nutrition

Year:

2006

Language:

english

File:

PDF, 598 KB

english, 2006

21

Characterization of ammonia oxidizing bacteria associated with weeds in a Japanese paddy field using amoA gene fragments

Saman BOWATTE, Rie ISHIHARA, Susumu ASAKAWA, Makoto KIMURA

Journal:

Soil Science & Plant Nutrition

Year:

2006

Language:

english

File:

PDF, 571 KB

english, 2006

22

Effect of elevated atmospheric CO2 concentration on ammonia oxidizing bacteria communities inhabiting in rice roots

Saman BOWATTE, Susumu ASAKAWA, Masumi OKADA, Kazuhiko KOBAYASHI, Makoto KIMURA

Journal:

Soil Science & Plant Nutrition

Year:

2007

Language:

english

File:

PDF, 214 KB

english, 2007

23

DNA and RNA in soil–What can we see through them? 6. Analysis of soil microbial community structure (Part 2). Application of DGGE to paddy field soil

Journal:

Soil Science & Plant Nutrition

Year:

2006

Language:

english

File:

PDF, 75 KB

english, 2006

24

Bacterial communities in manganese nodules in rice field subsoils: Estimation using PCR-DGGE and sequencing analyses

Vita Ratri CAHYANI, Jun MURASE, Eiji ISHIBASHI, Susumu ASAKAWA, Makoto KIMURA

Journal:

Soil Science & Plant Nutrition

Year:

2007

Language:

english

File:

PDF, 183 KB

english, 2007

25

Molecular analysis of fungal communities of biodegradable plastics in two Japanese soils

Masahiro KAMIYA, Susumu ASAKAWA, Makoto KIMURA

Journal:

Soil Science & Plant Nutrition

Year:

2007

Language:

english

File:

PDF, 224 KB

english, 2007

26

Molecular characterization of methane-oxidizing bacteria associated with rice straw decomposition in a rice field

Zhong-Jun JIA, Atsuo SUGANO, Naoko ASARI, Cho Cho TUN, Rie ISHIHARA, Susumu ASAKAWA, Makoto KIMURA

Journal:

Soil Science & Plant Nutrition

Year:

2007

Language:

english

File:

PDF, 1.80 MB

english, 2007

27

Molecular analyses reveal stability of bacterial communities in bulk soil of a Japanese paddy field: Estimation by denaturing gradient gel electrophoresis of 16S rRNA genes amplified from DNA accompanied with RNA

Hiroyasu KIKUCHI, Takeshi WATANABE, Zhongjun JIA, Makoto KIMURA, Susumu ASAKAWA

Journal:

Soil Science & Plant Nutrition

Year:

2007

Language:

english

File:

PDF, 186 KB

english, 2007

28

Abundance of bacteriophages of common heterotrophic bacteria in the floodwater of a Japanese paddy field

Natsuko NAKAYAMA, Mami OKUMURA, Katsuhiro INOUE, Susumu ASAKAWA, Makoto KIMURA

Journal:

Soil Science & Plant Nutrition

Year:

2007

Language:

english

File:

PDF, 651 KB

english, 2007

29

Ecology of viruses in soils: Past, present and future perspectives

Makoto KIMURA, Zhong-Jun JIA, Natsuko NAKAYAMA, Susumu ASAKAWA

Journal:

Soil Science & Plant Nutrition

Year:

2008

Language:

english

File:

PDF, 276 KB

english, 2008

30

Bacterial communities in iron mottles in the plow pan layer in a Japanese rice field: Estimation using PCR-DGGE and sequencing analyses

Vita Ratri CAHYANI, Jun MURASE, Akihiro IKEDA, Katsutoshi TAKI, Susumu ASAKAWA, Makoto KIMURA

Journal:

Soil Science & Plant Nutrition

Year:

2008

Language:

english

File:

PDF, 463 KB

english, 2008

31

Vertical changes in bacterial and archaeal communities with soil depth in Japanese paddy fields

Takeshi WATANABE, Guanghua WANG, Katsutoshi TAKI, Yoshinori OHASHI, Makoto KIMURA, Susumu ASAKAWA

Journal:

Soil Science & Plant Nutrition

Year:

2010

Language:

english

File:

PDF, 1.34 MB

english, 2010

32

Bacterial community in plant residues in a Japanese paddy field estimated by RFLP and DGGE analyses

Tomoya Matsuyama, Yasunori Nakajima, Kazuo Matsuya, Makoto Ikenaga, Susumu Asakawa, Makoto Kimura

Journal:

Soil Biology and Biochemistry

Year:

2007

Language:

english

File:

PDF, 554 KB

english, 2007

33

Morphological analysis of viral communities in the floodwater of a Japanese paddy field

Natsuko Nakayama, Mami Okumura, Katsuhiro Inoue, Susumu Asakawa, Makoto Kimura

Journal:

Soil Biology and Biochemistry

Year:

2007

Language:

english

File:

PDF, 361 KB

english, 2007

34

Dynamics of methanogenic archaeal communities based on rRNA analysis and their relation to methanogenic activity in Japanese paddy field soils

Takeshi Watanabe, Makoto Kimura, Susumu Asakawa

Journal:

Soil Biology and Biochemistry

Year:

2007

Language:

english

File:

PDF, 805 KB

english, 2007

35

Comparison of bacterial community structures at main habitats in paddy field ecosystem based on DGGE analysis

Susumu Asakawa, Makoto Kimura

Journal:

Soil Biology and Biochemistry

Year:

2008

Language:

english

File:

PDF, 404 KB

english, 2008

36

Frequency of phage-infected bacterial cells in the floodwater of a Japanese paddy field

Natsuko Nakayama, Susumu Asakawa, Makoto Kimura

Journal:

Soil Biology and Biochemistry

Year:

2009

Language:

english

File:

PDF, 336 KB

english, 2009

37

Identification of microbial communities that assimilate substrate from root cap cells in an aerobic soil using a DNA-SIP approach

Yong Li, Chol Gyu Lee, Takeshi Watanabe, Jun Murase, Susumu Asakawa, Makoto Kimura

Journal:

Soil Biology and Biochemistry

Year:

2011

Language:

english

File:

PDF, 942 KB

english, 2011

38

Evaluation of extracellular protease activities of soil bacteria

Watanabe Katsuji, Asakawa Susumu, Hayano Koichi

Journal:

Soil Biology and Biochemistry

Year:

1994

Language:

english

File:

PDF, 396 KB

english, 1994

39

Accumulation of tetrodotoxin (TTX) in Pseudocaligus fugu, a parasitic copepod from panther puffer Takifugu pardalis, but without vertical transmission—Using an immunoenzymatic technique

Koichi Ikeda, B.A Venmathi Maran, Shunichi Honda, Susumu Ohtsuka, Osamu Arakawa, Tomohiro Takatani, Manabu Asakawa, Geoffrey A. Boxshall

Journal:

Year:

2006

Language:

english

File:

PDF, 461 KB

english, 2006

40

Communities of methanogenic bacteria in paddy field soils with long-term application of organic matter

Susumu Asakawa, Masayo Akagawa-Matsushita, Yosuke Koga, Koichi Hayano

Journal:

Soil Biology and Biochemistry

Year:

1998

Language:

english

File:

PDF, 214 KB

english, 1998

41

Heterotrophic growth of cyanobacteria and phage-mediated microbial loop in soil: Examination by stable isotope probing (SIP) method

Lee, Chol Gyu, Watanabe, Takeshi, Fujita, Yuichi, Asakawa, Susumu, Kimura, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2012

Language:

english

File:

PDF, 448 KB

english, 2012

42

Bacterial communities that decompose root cap cells in an anaerobic soil: estimation by DNA-SIP method using rice plant callus cells

Li, Yong, Watanabe, Takeshi, Asakawa, Susumu, Kimura, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2012

Language:

english

File:

PDF, 509 KB

english, 2012

43

Succession and phylogenetic composition of bacterial communities responsible for the composting process of rice straw estimated by PCR-DGGE analysis

Cahyani, Vila Ratri, Matsuya, Kazuo, Asakawa, Susumu, Kimura, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2003

Language:

english

File:

PDF, 1.92 MB

english, 2003

44

A Role of Ghrelin in Neuroendocrine and Behavioral Responses to Stress in Mice

Asakawa, Akihiro, Inui, Akio, Kaga, Toshihiro, Yuzuriha, Hideki, Nagata, Toshiaki, Fujimiya, Mineko, Katsuura, Goro, Makino, Susumu, Fujino, Masayuki A., Kasuga, Masato

Journal:

Neuroendocrinology

Year:

2001

Language:

english

File:

PDF, 281 KB

english, 2001

45

Bacterial consortia in iron-deposited colonies formed on paddy soil surface under microaerobic conditions

Watanabe, Takeshi, Sumida, Hiroaki, Minh DO, Nhut, Yano, Katsuya, Asakawa, Susumu, Kimura, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2013

Language:

english

File:

PDF, 616 KB

english, 2013

46

Phylogenetic study on CTO primer-amplified ammonia-oxidizing bacteria and β- Proteobacteria associated with rice roots grown in a flooded paddy soil

Ikenaga, Makoto, Asakawa, Susumu, Muraoka, Yoshitetsu, Kimura, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2003

Language:

english

File:

PDF, 944 KB

english, 2003

47

Comparison of the frequency of visibly infected bacterial cells between the soil and the floodwater in two Japanese rice fields

Takahashi, Ryu, Saka, Norikuni, Honjo, Hiroki, Asakawa, Susumu, Kimura, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2013

Language:

english

File:

PDF, 238 KB

english, 2013

48

Bacterial communities associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-DGGE and sequence analyses

Ikenaga, Makoto, Asakawa, Susumu, Muraoka, Yoshitetsu, Kimura, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2003

Language:

english

File:

PDF, 1.27 MB

english, 2003

49

Estimation of microbial biomass potassium in paddy field soil

Yamashita, Kohei, Honjo, Hiroki, Nishida, Mizuhiko, Kimura, Makoto, Asakawa, Susumu

Journal:

Soil Science & Plant Nutrition

Year:

2014

Language:

english

File:

PDF, 252 KB

english, 2014

50

Carbon flow into ammonia-oxidizing bacteria and archaea during decomposition of 13 C-labeled plant residues in soil

Watanabe, Takeshi, Lee, Chol Gyu, Murase, Jun, Asakawa, Susumu, Kimura, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2011

Language:

english

File:

PDF, 891 KB

english, 2011